Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6101

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14469 and 14470 are separated by 640 nucleotides mRNA_6101: 14469 - KOG1303 Amino acid transporters, at 1,657,479 to 1,659,479 14469 mRNA_6102: 14470 - K14827 IPI1, TEX10 pre-rRNA-processing protein IPI1, at 1,660,120 to 1,663,221 14470

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,656,577 + +0.5
1,656,593 + +1.6
1,656,681 - -0.4
1,656,705 - -0.4
1,656,862 + -0.4
1,656,865 - -0.5
1,656,865 + +0.2
1,656,865 - +0.4
1,656,865 - +0.5
1,656,867 - +0.1
1,656,880 + +0.8
1,656,884 + +1.2
1,657,025 - +0.4
1,657,151 - +1.2
1,657,155 - +1.4
1,657,162 + -0.3
1,657,179 + -0.9
1,657,186 + +2.1
1,657,190 + -0.2
1,657,222 - +0.6
1,657,304 - +2.4
1,657,306 + +2.2
1,657,316 + +0.5
1,657,316 + +1.1
1,657,336 + +1.7
1,657,518 + -0.7
1,657,588 - +0.3
1,657,663 - +0.6
1,657,748 - 14469 mRNA_6101 0.13 -0.7
1,657,750 + 14469 mRNA_6101 0.14 +0.1
1,657,760 - 14469 mRNA_6101 0.14 +2.4
1,657,760 - 14469 mRNA_6101 0.14 +1.1
1,657,818 - 14469 mRNA_6101 0.17 -0.0
1,657,917 + 14469 mRNA_6101 0.22 -0.4
1,657,929 + 14469 mRNA_6101 0.22 +0.1
1,658,034 - 14469 mRNA_6101 0.28 +0.7
1,658,098 - 14469 mRNA_6101 0.31 +0.0
1,658,179 - 14469 mRNA_6101 0.35 +1.7
1,658,201 - 14469 mRNA_6101 0.36 +0.2
1,658,204 - 14469 mRNA_6101 0.36 +2.5
1,658,511 - 14469 mRNA_6101 0.52 +0.2
1,658,578 - 14469 mRNA_6101 0.55 -0.3
1,658,586 + 14469 mRNA_6101 0.55 +1.4
1,658,651 - 14469 mRNA_6101 0.59 +2.1
1,658,746 - 14469 mRNA_6101 0.63 -0.9
1,658,774 + 14469 mRNA_6101 0.65 +0.7
1,658,866 - 14469 mRNA_6101 0.69 +0.6
1,658,897 - 14469 mRNA_6101 0.71 +0.7
1,658,906 - 14469 mRNA_6101 0.71 -0.4
1,659,206 - 14469 mRNA_6101 0.86 +0.0
1,659,222 - 14469 mRNA_6101 0.87 +2.2
1,659,331 - +0.5
1,659,352 - +1.0
1,659,395 + +0.0
1,659,483 - +0.3
1,659,485 - +0.1
1,659,487 + -0.7
1,659,507 - +0.4
1,659,795 + +1.6
1,659,917 + +1.5
1,659,930 - -0.9
1,660,098 - -1.0

Or see this region's nucleotide sequence