Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6107

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14474 and 14475 are separated by 331 nucleotides14475 and 14476 are separated by 226 nucleotides mRNA_6106: 14474 - K08332 VAC8 vacuolar protein 8, at 223 to 3,658 14474 mRNA_6107: 14475 - K14401 CPSF1, CFT1 cleavage and polyadenylation specificity factor subunit 1, at 3,990 to 10,005 14475 mRNA_6108: 14476 - Hypothetical Protein, at 10,232 to 11,111 14476

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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3,125 - 14474 mRNA_6106 0.84 -1.5
3,248 - 14474 mRNA_6106 0.88 +0.0
3,570 + +0.8
3,665 + +0.8
3,692 + +0.2
3,706 + +1.1
3,726 + -2.3
3,820 + +1.6
3,853 + +0.4
3,859 + +0.6
3,909 - +0.1
3,929 - +0.0
10,606 - 14476 mRNA_6108 0.42 -0.6
10,729 - 14476 mRNA_6108 0.56 -0.1
10,746 - 14476 mRNA_6108 0.58 -0.0
10,784 - 14476 mRNA_6108 0.63 +2.0
10,913 - 14476 mRNA_6108 0.77 +2.2
11,005 + 14476 mRNA_6108 0.88 -0.6

Or see this region's nucleotide sequence