Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6127

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14495 and 14496 are separated by 215 nucleotides mRNA_6127: 14495 - KOG0772 Uncharacterized conserved protein, contains WD40 repeat, at 68,190 to 70,680 14495 mRNA_6128: 14496 - BLAST DEHA2B11858p [Debaryomyces hansenii CBS767], at 70,896 to 71,507 14496

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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67,253 - +0.5
67,255 - +0.5
67,257 - -0.4
67,262 - +0.9
67,267 + +0.4
67,271 + +1.9
67,303 - +0.7
67,318 - -1.5
67,321 + -0.3
67,350 - -1.5
67,390 + +1.1
67,412 + +0.1
67,416 + -0.1
67,423 - +0.4
67,424 - +0.5
67,424 - -0.2
67,426 + +2.0
67,427 - +1.3
67,444 + +0.3
67,447 - +1.4
67,500 + -0.9
67,502 - -0.2
67,510 + -1.4
67,516 - +1.5
67,520 - +0.2
67,974 + +0.6
68,089 + -0.3
68,096 + -0.8
68,107 - -0.2
68,124 + -0.8
70,720 - +1.3
70,828 + +0.3
70,837 - +0.5
70,846 - +1.2
70,999 + 14496 mRNA_6128 0.17 +1.2
71,031 + 14496 mRNA_6128 0.22 +0.6
71,151 + 14496 mRNA_6128 0.42 +1.4
71,296 + 14496 mRNA_6128 0.65 +0.3
71,420 - 14496 mRNA_6128 0.86 -0.3
71,440 + 14496 mRNA_6128 0.89 -0.5
71,443 - 14496 mRNA_6128 0.89 -0.3
71,451 + -0.9
71,470 + +0.1
71,560 + +1.2

Or see this region's nucleotide sequence