Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6145

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14512 and 14513 are separated by 435 nucleotides14513 and 14514 are separated by 482 nucleotides mRNA_6144: 14512 - KOG1414 Transcriptional activator FOSB/c-Fos and related bZIP transcription factors, at 113,146 to 115,077 14512 mRNA_6145: 14513 - HMMPfam-Protein of unknown function (DUF2456)-PF10445, at 115,513 to 116,915 14513 mRNA_6146: 14514 - K02925 RP-L3e, RPL3 large subunit ribosomal protein L3e, at 117,398 to 118,882 14514

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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114,958 + +2.5
115,135 - +0.5
115,298 + -4.2
115,400 + +0.2
115,794 - 14513 mRNA_6145 0.20 -0.1
115,922 + 14513 mRNA_6145 0.29 -0.7
116,022 - 14513 mRNA_6145 0.36 +1.5
116,079 - 14513 mRNA_6145 0.40 -0.5
116,109 - 14513 mRNA_6145 0.42 +0.0
116,127 + 14513 mRNA_6145 0.44 -0.1
116,290 - 14513 mRNA_6145 0.55 -2.7
116,312 + 14513 mRNA_6145 0.57 -0.3
116,313 - 14513 mRNA_6145 0.57 +0.8
116,426 + 14513 mRNA_6145 0.65 -0.7
116,535 - 14513 mRNA_6145 0.73 -0.0
116,656 + 14513 mRNA_6145 0.81 +1.4
116,664 - 14513 mRNA_6145 0.82 +0.3
116,699 - 14513 mRNA_6145 0.85 -1.1
116,716 - 14513 mRNA_6145 0.86 +0.6
116,716 + 14513 mRNA_6145 0.86 +0.1
116,755 - 14513 mRNA_6145 0.89 +2.7
116,850 + -0.1
116,865 - -0.3
116,951 + +2.3
117,005 - +0.0
117,017 + +1.8
117,025 - -0.1
117,029 - +1.5
117,036 + -0.8
117,036 + +0.1
117,036 + +0.8
117,036 + +1.8
117,039 + -0.8
117,048 + +1.0
117,132 + -0.6
117,170 - -0.3
117,215 + -0.4

Or see this region's nucleotide sequence