Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6197

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14564 and 14565 are separated by 134 nucleotides14565 and 14566 overlap by 2 nucleotides mRNA_6196: 14564 - Hypothetical Protein, at 225,563 to 227,023 14564 mRNA_6197: 14565 - K01885 EARS, gltX glutamyl-tRNA synthetase, at 227,158 to 229,573 14565 mRNA_6198: 14566 - BLAST tyrosine kinase domain protein [Rhizoctonia solani AG..., at 229,572 to 230,681 14566

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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226,676 - 14564 mRNA_6196 0.76 +0.5
226,823 + 14564 mRNA_6196 0.86 -1.2
226,975 + +0.4
226,986 - -0.8
229,579 - +1.7
229,586 + +0.5
229,592 + +3.0
229,596 - +3.3
229,747 + 14566 mRNA_6198 0.16 -0.8
229,752 - 14566 mRNA_6198 0.16 +0.1
229,767 + 14566 mRNA_6198 0.18 +0.8
229,863 + 14566 mRNA_6198 0.26 -0.4
230,266 + 14566 mRNA_6198 0.63 -0.6
230,345 + 14566 mRNA_6198 0.70 -0.3

Or see this region's nucleotide sequence