Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6204

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14571 and 14572 are separated by 176 nucleotides14572 and 14573 are separated by 101 nucleotides mRNA_6203: 14571 - HMMPfam-HbrB-like-PF08539, at 240,769 to 243,130 14571 mRNA_6204: 14572 - KOG1618 Predicted phosphatase, at 243,307 to 244,867 14572 mRNA_6205: 14573 - HMMPfam-Peptidase M50B-like-PF13398, at 244,969 to 246,074 14573

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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242,920 - +0.3
243,072 - -0.6
243,082 + -0.2
243,200 + +1.7
243,232 + +0.4
243,240 + -0.8
243,242 + -0.0
243,268 + +0.1
243,394 - +1.8
243,512 + 14572 mRNA_6204 0.13 +0.5
243,765 + 14572 mRNA_6204 0.29 +1.5
243,925 - 14572 mRNA_6204 0.40 +1.2
243,956 + 14572 mRNA_6204 0.42 +1.4
243,996 - 14572 mRNA_6204 0.44 +0.9
244,140 + 14572 mRNA_6204 0.53 -0.3
244,383 + 14572 mRNA_6204 0.69 +0.1
244,656 - 14572 mRNA_6204 0.86 +0.3
245,105 + 14573 mRNA_6205 0.12 -0.9
245,253 - 14573 mRNA_6205 0.26 +0.0
245,256 - 14573 mRNA_6205 0.26 -1.1
245,256 + 14573 mRNA_6205 0.26 +0.7
245,543 - 14573 mRNA_6205 0.52 +0.1
245,658 + 14573 mRNA_6205 0.62 -0.1

Or see this region's nucleotide sequence