Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6226

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14594 and 14595 are separated by 966 nucleotides mRNA_6226: 14594 - Hypothetical Protein, at 297,535 to 298,697 14594 mRNA_6227: 14595 - BLAST DEAD box helicase [Trichophyton violaceum], at 299,664 to 299,897 14595

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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296,569 + +0.2
296,579 + +0.6
296,587 - +1.7
296,595 - +0.2
296,604 - +0.5
296,604 + +1.9
296,617 + +0.8
296,624 - +2.0
296,713 + +1.3
296,738 - +0.4
296,752 - -0.9
297,301 + -0.3
297,345 + -0.5
297,739 + 14594 mRNA_6226 0.18 +0.1
297,750 + 14594 mRNA_6226 0.18 +1.7
297,778 + 14594 mRNA_6226 0.21 +1.3
297,778 - 14594 mRNA_6226 0.21 -0.6
298,489 + 14594 mRNA_6226 0.82 -0.0
298,626 - -0.1
298,640 - +1.1
298,664 + -0.2
298,755 + +1.3
298,756 - +1.1
298,757 + -2.4
298,764 + -1.2
298,953 + +0.0
299,024 + +0.8
299,095 - -0.2
299,099 - +0.8
299,105 + +0.1
299,105 - +0.8
299,106 + +1.4
299,147 - +1.8
299,151 + +0.3
299,159 - -0.4
299,160 + +0.3
299,205 + +0.2
299,207 - +1.1
299,230 + +0.0

Or see this region's nucleotide sequence