Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6245

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_6245: 14613 - HMMPfam-Cellulase (glycosyl hydrolase family 5)-PF00150,SUPERFAMILY--SSF51445, at 343,220 to 344,409 14613

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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342,264 + +0.3
342,309 - +0.4
342,428 + +1.4
342,453 + +0.4
342,463 + +1.6
342,469 + +1.6
342,470 - -0.9
342,607 - +1.6
342,609 - +0.2
342,621 + +0.4
342,659 - -0.9
342,760 - +1.3
342,778 + +1.0
342,797 + +0.6
342,828 - +0.6
342,886 + +0.2
342,922 + +0.2
342,941 + +1.1
342,963 - +1.0
342,971 + +1.6
342,988 - +3.5
343,679 + 14613 mRNA_6245 0.39 +0.9
343,982 + 14613 mRNA_6245 0.64 +1.2
344,406 + +0.1
344,865 + +0.7
345,166 - +0.7
345,186 + +1.6
345,190 + +1.5
345,341 + -0.0
345,360 - +0.4
345,374 - -0.0
345,384 - +1.2
345,392 + +0.5
345,395 - +0.1
345,407 - -0.7

Or see this region's nucleotide sequence