Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6270

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14637 and 14638 are separated by 725 nucleotides14638 and 14639 are separated by 0 nucleotides mRNA_6269: 14637 - KOG1336 Monodehydroascorbate/ferredoxin reductase, at 405,556 to 407,019 14637 mRNA_6270: 14638 - KOG2645 Type I phosphodiesterase/nucleotide pyrophosphatase, at 407,745 to 410,533 14638 mRNA_6271: 14639 - Hypothetical Protein, at 410,534 to 411,923 14639

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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406,775 + 14637 mRNA_6269 0.83 +0.4
407,079 - +0.9
407,092 - +0.9
407,096 + +0.3
407,201 - +2.8
407,216 - +1.3
407,230 + +1.3
407,234 - -0.2
407,491 - -1.9
407,503 - +0.1
407,524 - +0.8
407,527 - +1.6
407,535 - -0.5
407,544 - +0.5
407,548 - +0.3
407,552 + +1.0
407,670 - +1.2
407,673 - +1.9
407,680 + +1.5
407,847 - +1.6
407,985 - +0.6
407,994 + +0.1
408,006 + -0.3
408,266 - 14638 mRNA_6270 0.19 -1.2
408,321 + 14638 mRNA_6270 0.21 +1.2
408,416 + 14638 mRNA_6270 0.24 +1.5
408,716 + 14638 mRNA_6270 0.35 +2.1
408,721 - 14638 mRNA_6270 0.35 +0.2
409,016 + 14638 mRNA_6270 0.46 -0.4
409,124 - 14638 mRNA_6270 0.49 -0.2
409,139 - 14638 mRNA_6270 0.50 -1.7
409,271 - 14638 mRNA_6270 0.55 +2.5
409,434 - 14638 mRNA_6270 0.61 +0.6
409,955 - 14638 mRNA_6270 0.79 +0.1
410,165 - 14638 mRNA_6270 0.87 -0.4
410,174 + 14638 mRNA_6270 0.87 -2.9
410,301 - +1.0
410,447 - +1.9
410,471 + +0.3
410,476 - +1.2
410,572 + +2.1
410,592 - +0.1
410,599 + +0.4
410,601 + +0.2
410,606 + -1.0
410,607 + -0.7
410,617 - -0.2
410,765 - 14639 mRNA_6271 0.17 -0.4
410,770 - 14639 mRNA_6271 0.17 +0.7
410,781 + 14639 mRNA_6271 0.18 +0.1
410,781 - 14639 mRNA_6271 0.18 -0.2
410,789 + 14639 mRNA_6271 0.18 +0.6
410,792 + 14639 mRNA_6271 0.19 -0.7
410,792 - 14639 mRNA_6271 0.19 -0.8
410,797 - 14639 mRNA_6271 0.19 -1.1
410,816 + 14639 mRNA_6271 0.20 +0.8
410,925 - 14639 mRNA_6271 0.28 +0.1
410,928 + 14639 mRNA_6271 0.28 +3.4
411,080 + 14639 mRNA_6271 0.39 +2.2
411,095 - 14639 mRNA_6271 0.40 +1.3
411,106 + 14639 mRNA_6271 0.41 +3.6
411,190 + 14639 mRNA_6271 0.47 +2.2
411,233 - 14639 mRNA_6271 0.50 +0.7
411,253 - 14639 mRNA_6271 0.52 +1.0
411,254 + 14639 mRNA_6271 0.52 +0.3
411,398 - 14639 mRNA_6271 0.62 +0.1
411,522 - 14639 mRNA_6271 0.71 -2.0
411,527 - 14639 mRNA_6271 0.71 +1.5

Or see this region's nucleotide sequence