Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6275

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14642 and 14643 are separated by 360 nucleotides14643 and 14644 are separated by 793 nucleotides mRNA_6274: 14642 - Hypothetical Protein, at 418,088 to 419,666 14642 mRNA_6275: 14643 - BLAST secreted protein [Melampsora larici-populina 98AG31], at 420,027 to 422,108 14643 mRNA_6276: 14644 - K12615 EDC3 enhancer of mRNA-decapping protein 3, at 422,902 to 424,921 14644

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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419,284 - 14642 mRNA_6274 0.76 +2.8
419,395 - 14642 mRNA_6274 0.83 +0.2
419,542 - -0.0
419,699 - -0.2
419,864 - -0.2
419,868 - +0.2
420,010 - -1.5
420,015 - +0.6
420,496 + 14643 mRNA_6275 0.23 -0.8
420,700 + 14643 mRNA_6275 0.32 -1.0
420,712 - 14643 mRNA_6275 0.33 -0.2
420,738 + 14643 mRNA_6275 0.34 +2.0
421,517 + 14643 mRNA_6275 0.72 -0.1
421,518 - 14643 mRNA_6275 0.72 -1.1
421,674 + 14643 mRNA_6275 0.79 +1.0
421,911 + +0.4
421,925 + +0.2
422,006 + +0.6
422,031 + -0.9
422,356 - -1.3
422,361 + +0.1
422,377 - -0.3
422,386 - -1.4
422,400 + +0.2
422,484 - -0.3
422,496 - +0.2
422,509 + -0.3
422,511 + +0.1
422,526 - +0.4
422,668 - +0.5
422,671 - +0.1
422,676 - -0.9
422,681 + -0.3
422,684 + +0.2
422,706 + -0.8
422,816 - -0.6
422,816 + +0.9
422,828 + -1.7
422,842 + +1.7
422,845 + -0.3
422,847 + +0.2
422,970 + +0.2
422,972 + +2.3
422,973 - -0.2
422,977 + +0.8
422,979 + -0.1
422,979 + -0.0
422,996 - +0.1

Or see this region's nucleotide sequence