Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6286

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14653 and 14654 are separated by 286 nucleotides14654 and 14655 are separated by 483 nucleotides mRNA_6285: 14653 - K05610 UCHL5, UCH37 ubiquitin carboxyl-terminal hydrolase L5, at 442,614 to 443,927 14653 mRNA_6286: 14654 - HMMPfam-Protein of unknown function (DUF3128)-PF11326, at 444,214 to 444,568 14654 mRNA_6287: 14655 - K01262 pepP Xaa-Pro aminopeptidase, at 445,052 to 447,744 14655

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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443,621 - 14653 mRNA_6285 0.77 +0.1
443,866 + +3.6
444,013 - +0.3
444,722 - +0.7
444,853 - -0.0
444,867 - +0.3
444,868 - +2.0
444,872 + +0.5
444,978 + -0.4
445,014 - +0.6
445,015 - +1.4
445,021 - +1.9
445,036 - +1.7
445,050 - -1.7
445,052 - +1.1
445,059 + +1.3
445,144 + -1.6
445,168 - -1.3
445,177 - -1.7
445,177 + +0.6
445,209 + -1.0
445,212 + +0.1
445,221 - +0.9
445,287 + -0.1
445,333 - 14655 mRNA_6287 0.10 +0.4
445,347 - 14655 mRNA_6287 0.11 +2.1
445,351 + 14655 mRNA_6287 0.11 -0.7

Or see this region's nucleotide sequence