Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6296

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14663 and 14664 are separated by 306 nucleotides mRNA_6295: 14663 - K11593 ELF2C, AGO eukaryotic translation initiation factor 2C, at 463,148 to 466,558 14663 mRNA_6296: 14664 - Hypothetical Protein, at 466,865 to 468,121 14664

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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466,277 - +0.5
466,337 - -0.4
467,192 - 14664 mRNA_6296 0.26 -1.2
467,363 - 14664 mRNA_6296 0.40 +0.4
467,506 + 14664 mRNA_6296 0.51 +0.5
467,511 - 14664 mRNA_6296 0.51 -1.4
468,514 + -0.8
468,662 - -0.1
468,667 - +0.4
468,795 - +1.2
468,800 - +0.5
468,802 - +0.2
468,822 - +0.1
468,942 + +1.0
468,951 - +1.3
468,964 + +0.6
468,977 + +0.8
469,095 - -0.1
469,100 - +0.8
469,109 + -0.7

Or see this region's nucleotide sequence