Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6312

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14679 and 14680 are separated by 466 nucleotides14680 and 14681 are separated by 425 nucleotides mRNA_6311: 14679 - K03514 PAPD5_7, TRF4 non-canonical poly(A) RNA polymerase PAPD5/7, at 505,082 to 507,881 14679 mRNA_6312: 14680 - K10754 RFC1 replication factor C subunit 1, at 508,348 to 511,991 14680 mRNA_6313: 14681 - K10592 HUWE1, MULE, ARF-BP1 E3 ubiquitin-protein ligase HUWE1, at 512,417 to 524,941 14681

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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507,690 - +0.7
507,966 + +1.4
507,979 + +1.7
507,982 - -0.4
508,104 - +0.1
511,778 - +2.3
511,899 + -0.0
511,908 + -0.2
511,914 - +0.5
512,021 + +1.7
512,047 - +0.8
512,057 + +0.2
512,064 - +0.1
512,180 + +1.2
512,197 - +1.8
512,324 - -0.0
512,351 - +1.4

Or see this region's nucleotide sequence