Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6328

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14695 and 14696 are separated by 744 nucleotides14696 and 14697 are separated by 358 nucleotides mRNA_6327: 14695 - K13124 MORG1 mitogen-activated protein kinase organizer 1, at 555,929 to 557,274 14695 mRNA_6328: 14696 - Hypothetical Protein, at 558,019 to 558,735 14696 mRNA_6329: 14697 - BLAST clp1-like protein [Moniliophthora roreri MCA 2997], at 559,094 to 560,421 14697

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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557,226 - +2.2
557,251 + -1.7
557,266 - -0.8
557,284 - -2.1
557,379 + +0.4
557,382 - +1.7
557,401 - -0.7
557,402 - +2.0
557,402 + -2.2
557,410 - +0.7
557,412 - +1.6
557,414 - +1.3
557,419 + -0.9
557,419 + +0.3
557,423 + +1.3
557,454 + +0.0
557,543 - +0.5
557,547 - +0.9
557,554 - -0.4
557,555 - +0.4
557,556 - +0.8
557,560 - +0.2
557,568 + +0.5
557,575 + +1.6
557,575 + +0.5
557,594 + +1.5
557,594 + +0.1
557,669 + -2.6
557,671 - -0.9
557,673 + +0.1
557,686 + +0.4
557,688 - -1.6
557,689 - -0.7
557,690 - -1.2
557,690 - -0.4
557,694 - +0.0
557,695 - +3.1
557,700 + +2.7
557,700 + -0.2
557,704 + -0.2
557,707 + -0.5
557,709 - +1.0
557,710 - -0.2
557,713 + +0.7
557,719 - +1.3
557,739 - -0.2
557,749 + -0.1
557,752 - -0.6
557,753 + +0.4
557,755 - +1.6
557,757 - -0.2
557,793 + -0.3
557,901 - +1.0
558,036 - +1.0
558,043 + -0.3
558,045 + +0.1
558,055 + +0.5
558,096 - 14696 mRNA_6328 0.11 -0.1
558,196 - 14696 mRNA_6328 0.25 +0.3
558,339 + 14696 mRNA_6328 0.45 +1.3
558,481 + 14696 mRNA_6328 0.64 -0.4
558,626 - 14696 mRNA_6328 0.85 -1.0
558,742 - -0.1
558,750 + -0.1
558,776 - +0.9
558,890 + -0.0
559,016 - -1.4
559,125 - +1.3
559,219 - +2.6
559,226 + +0.7
559,229 - 14697 mRNA_6329 0.10 +1.5
559,349 - 14697 mRNA_6329 0.19 -0.0
559,352 - 14697 mRNA_6329 0.19 +1.4
559,369 + 14697 mRNA_6329 0.21 +0.5
559,377 - 14697 mRNA_6329 0.21 +0.2
559,383 - 14697 mRNA_6329 0.22 +1.4
559,388 - 14697 mRNA_6329 0.22 +0.1
559,390 - 14697 mRNA_6329 0.22 +0.6
559,398 - 14697 mRNA_6329 0.23 +1.2
559,401 - 14697 mRNA_6329 0.23 +1.8
559,570 + 14697 mRNA_6329 0.36 -0.6
559,599 - 14697 mRNA_6329 0.38 -0.5

Or see this region's nucleotide sequence