Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6331

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14698 and 14699 are separated by 850 nucleotides14699 and 14700 are separated by 268 nucleotides mRNA_6330: 14698 - K03119 tauD taurine dioxygenase, at 560,667 to 562,112 14698 mRNA_6331: 14699 - Hypothetical Protein, at 562,963 to 566,521 14699 mRNA_6332: 14700 - KOG0725 Reductases with broad range of substrate specificities, at 566,790 to 568,565 14700

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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562,063 + +0.4
562,152 + -1.3
562,175 + +0.5
562,287 - +1.9
562,314 - +0.3
562,321 + -0.6
562,328 - +0.2
562,407 - +0.2
562,467 - +0.9
562,471 + +1.4
562,477 + -1.5
562,480 - +0.4
562,484 - -0.0
562,491 + +1.1
562,496 - +1.6
562,497 + -0.2
562,501 + -0.3
562,503 - +0.7
562,507 + +0.8
562,507 + -0.2
562,511 + +1.7
562,518 + -1.0
562,617 - -1.4
562,619 + -0.8
562,622 - +1.6
562,623 + +0.0
562,624 + +0.6
562,624 + +0.1
562,632 + -0.1
562,633 + -0.3
562,640 - +0.3
562,641 - +1.3
562,646 + +0.2
562,658 + -1.0
562,927 - +1.8
562,932 - +1.2
562,932 - +1.3
562,933 + -1.2
562,942 - -0.4
562,955 + -0.9
563,107 - +1.7
563,239 - -0.3
563,360 + 14699 mRNA_6331 0.11 -0.1
563,386 + 14699 mRNA_6331 0.12 -0.9
563,812 + 14699 mRNA_6331 0.24 -0.9
563,821 - 14699 mRNA_6331 0.24 -1.0
563,833 + 14699 mRNA_6331 0.24 -0.1
563,986 - 14699 mRNA_6331 0.29 -2.4
565,558 + 14699 mRNA_6331 0.73 -1.0
565,574 + 14699 mRNA_6331 0.73 -0.4
565,866 + 14699 mRNA_6331 0.82 -0.5
565,910 + 14699 mRNA_6331 0.83 -1.9
566,026 + 14699 mRNA_6331 0.86 +0.1
566,041 - 14699 mRNA_6331 0.86 -0.7
566,041 - 14699 mRNA_6331 0.86 -0.5
566,452 - -1.0
566,515 - -0.4
566,521 + -0.4
566,530 + +1.4
566,541 + +2.7
566,626 - -1.2
566,654 - +0.4
566,657 + +1.2
566,658 - +0.3
566,749 - +1.5
566,816 - -2.4
566,901 + +0.8
566,929 + -0.0
567,109 + 14700 mRNA_6332 0.18 +0.6
567,228 - 14700 mRNA_6332 0.25 +1.4

Or see this region's nucleotide sequence