Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6344

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14711 and 14712 are separated by 582 nucleotides14712 and 14713 are separated by 286 nucleotides mRNA_6343: 14711 - K12621 LSM2 U6 snRNA-associated Sm-like protein LSm2, at 590,850 to 591,445 14711 mRNA_6344: 14712 - KOG3525 Subtilisin-like proprotein convertase, at 592,028 to 595,751 14712 mRNA_6345: 14713 - HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961, at 596,038 to 599,020 14713

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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591,483 - -1.0
591,488 + -0.2
591,492 + +1.1
591,495 - +0.9
591,495 - -0.8
591,522 - +0.6
591,656 + +0.1
591,693 + -0.6
591,817 - +0.1
591,840 + +1.3
592,034 + -2.1
592,179 + +0.8
592,242 + +1.7
592,816 + 14712 mRNA_6344 0.21 +3.1
593,545 - 14712 mRNA_6344 0.41 -0.7
593,683 + 14712 mRNA_6344 0.44 -1.1
593,841 - 14712 mRNA_6344 0.49 -0.2
593,849 + 14712 mRNA_6344 0.49 +1.1
594,254 - 14712 mRNA_6344 0.60 -0.6
594,286 - 14712 mRNA_6344 0.61 -0.9
594,411 + 14712 mRNA_6344 0.64 +0.3
594,552 - 14712 mRNA_6344 0.68 +0.9
594,879 - 14712 mRNA_6344 0.77 -0.5
595,297 + 14712 mRNA_6344 0.88 +0.4
595,444 - +2.1
595,604 + +0.0
595,605 + +0.6
595,623 + +0.1
596,135 + +0.1

Or see this region's nucleotide sequence