Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6372

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14739 and 14740 are separated by 314 nucleotides14740 and 14741 are separated by 527 nucleotides mRNA_6371: 14739 - HMMPfam-SET domain-PF00856,ProSiteProfiles-SET domain profile.-PS50280,SUPERFAMILY--SSF82199, at 659,092 to 660,021 14739 mRNA_6372: 14740 - BLAST similar to DNA repair protein Dds20/Mei5 [Botrytis ci..., at 660,336 to 661,808 14740 mRNA_6373: 14741 - K03013 RPB5, POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1, at 662,336 to 663,388 14741

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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659,346 - 14739 mRNA_6371 0.27 +1.0
659,769 + 14739 mRNA_6371 0.73 +1.2
659,797 + 14739 mRNA_6371 0.76 +1.4
659,951 - +1.8
659,952 + +0.7
660,222 - +3.4
660,227 + +1.2
660,227 + -1.9
661,411 - 14740 mRNA_6372 0.73 -0.0
661,553 - 14740 mRNA_6372 0.83 +1.4
661,787 - -1.3
661,822 + -0.1
661,830 - +1.1
661,858 - -0.6
661,877 + -0.1
661,881 - -0.5
662,103 + -0.1
662,113 - +3.3
662,116 + +0.5
662,140 - +1.3
662,161 - -0.1
662,276 - +0.7
662,279 - +1.9

Or see this region's nucleotide sequence