Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6390

Experiment: 40 hrs Low Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14757 and 14758 are separated by 355 nucleotides14758 and 14759 are separated by 424 nucleotides mRNA_6389: 14757 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Protein kinases ATP-binding region signature.-PS00107,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112, at 695,999 to 699,737 14757 mRNA_6390: 14758 - KOG0605 NDR and related serine/threonine kinases, at 700,093 to 702,768 14758 mRNA_6391: 14759 - K11558 SPC25 kinetochore protein Spc25, fungi type, at 703,193 to 704,324 14759

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
remove
699,198 - 14757 mRNA_6389 0.86 +0.3
699,451 + +1.6
699,506 + +0.8
699,517 + -0.1
699,523 - +0.6
699,604 + -1.1
699,619 - -0.8
699,620 + -0.6
700,055 - -0.0
700,203 + -0.6
700,263 + -0.9
700,481 + 14758 mRNA_6390 0.14 -0.5
700,506 - 14758 mRNA_6390 0.15 -1.2
700,653 - 14758 mRNA_6390 0.21 -1.8
700,899 - 14758 mRNA_6390 0.30 -1.0
700,899 - 14758 mRNA_6390 0.30 -0.0
700,899 - 14758 mRNA_6390 0.30 -0.2
700,971 + 14758 mRNA_6390 0.33 -0.0
701,082 - 14758 mRNA_6390 0.37 -0.0
701,130 + 14758 mRNA_6390 0.39 -0.1
701,130 - 14758 mRNA_6390 0.39 -0.4
701,136 + 14758 mRNA_6390 0.39 -1.9
701,221 - 14758 mRNA_6390 0.42 -0.3
701,261 + 14758 mRNA_6390 0.44 -1.0
701,345 + 14758 mRNA_6390 0.47 -0.5
701,393 - 14758 mRNA_6390 0.49 +0.6
701,529 - 14758 mRNA_6390 0.54 +0.5
701,731 - 14758 mRNA_6390 0.61 -0.4
702,103 + 14758 mRNA_6390 0.75 -0.4
702,572 - +0.3
702,606 + +1.4
703,006 - +0.7
703,009 + +0.5
703,153 + +0.1

Or see this region's nucleotide sequence