Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6404

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14771 and 14772 are separated by 28 nucleotides14772 and 14773 are separated by 282 nucleotides mRNA_6403: 14771 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 732,362 to 733,777 14771 mRNA_6404: 14772 - K20280 TRAPPC5, TRS31 trafficking protein particle complex subunit 5, at 733,806 to 734,712 14772 mRNA_6405: 14773 - KOG0725 Reductases with broad range of substrate specificities, at 734,995 to 736,035 14773

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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733,022 - 14771 mRNA_6403 0.47 +0.2
733,161 - 14771 mRNA_6403 0.56 +0.5
733,302 + 14771 mRNA_6403 0.66 -0.1
733,328 + 14771 mRNA_6403 0.68 +0.7
733,461 - 14771 mRNA_6403 0.78 +0.1
733,462 - 14771 mRNA_6403 0.78 -0.1
733,594 + 14771 mRNA_6403 0.87 -0.4
733,638 - +0.7
733,639 + -0.3
734,107 + 14772 mRNA_6404 0.33 -0.8
735,088 - +0.1
735,159 - 14773 mRNA_6405 0.16 +0.5
735,500 - 14773 mRNA_6405 0.49 -0.5
735,657 + 14773 mRNA_6405 0.64 -0.4

Or see this region's nucleotide sequence