Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6406

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14773 and 14774 are separated by 861 nucleotides14774 and 14775 are separated by 181 nucleotides mRNA_6405: 14773 - KOG0725 Reductases with broad range of substrate specificities, at 734,995 to 736,035 14773 mRNA_6406: 14774 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 736,897 to 739,297 14774 mRNA_6407: 14775 - HMMPfam-Protein of unknown function (DUF952)-PF06108,SUPERFAMILY--SSF56399, at 739,479 to 740,196 14775

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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735,919 - 14773 mRNA_6405 0.89 -0.4
736,093 + +1.7
736,096 - -2.2
736,097 + +0.6
736,098 + -0.0
736,099 - -0.1
736,235 - +0.2
736,382 - -0.4
736,444 + -0.4
736,537 + +0.0
736,674 + +1.3
736,682 + -0.3
736,694 - +0.1
736,831 - +2.4
737,128 - +1.7
737,312 - 14774 mRNA_6406 0.17 +0.0
737,453 + 14774 mRNA_6406 0.23 +0.7
737,739 + 14774 mRNA_6406 0.35 +1.4
737,870 - 14774 mRNA_6406 0.41 -1.3
737,871 + 14774 mRNA_6406 0.41 +1.0
737,881 + 14774 mRNA_6406 0.41 -0.5
738,048 - 14774 mRNA_6406 0.48 +2.0
738,468 + 14774 mRNA_6406 0.65 +0.2
738,884 + 14774 mRNA_6406 0.83 -0.2
739,231 + +1.4
739,509 + +1.4
739,858 - 14775 mRNA_6407 0.53 -1.9
739,922 + 14775 mRNA_6407 0.62 +0.0
740,097 + 14775 mRNA_6407 0.86 -1.1
740,109 + 14775 mRNA_6407 0.88 -0.2
740,118 + 14775 mRNA_6407 0.89 +0.0
740,245 + -0.7
740,256 + +0.0

Or see this region's nucleotide sequence