Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6421

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14788 and 14789 are separated by 215 nucleotides14789 and 14790 are separated by 0 nucleotides mRNA_6420: 14788 - K14263 BNA7 kynurenine formamidase, at 764,043 to 765,055 14788 mRNA_6421: 14789 - SUPERFAMILY--SSF82199, at 765,271 to 766,029 14789 mRNA_6422: 14790 - KOG2084 Predicted histone tail methylase containing SET domain, at 766,030 to 767,975 14790

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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764,519 + 14788 mRNA_6420 0.47 +0.8
764,569 + 14788 mRNA_6420 0.52 +0.1
764,829 - 14788 mRNA_6420 0.78 +0.3
765,008 - +2.0
765,014 + -0.2
765,047 - +0.1
765,100 - +0.9
765,101 - +0.3
765,124 - +1.0
765,129 + -0.9
765,131 - +2.2
765,132 - +1.0
765,141 - +0.2
765,155 + +0.0
765,251 + +0.0
765,289 + -0.1
765,402 - 14789 mRNA_6421 0.17 +0.9
765,561 - 14789 mRNA_6421 0.38 +0.2
765,684 + 14789 mRNA_6421 0.54 -0.6
765,722 + 14789 mRNA_6421 0.59 -0.3
766,229 - 14790 mRNA_6422 0.10 +0.7
766,555 - 14790 mRNA_6422 0.27 +0.1
766,659 + 14790 mRNA_6422 0.32 +0.8
766,878 + 14790 mRNA_6422 0.44 -0.8

Or see this region's nucleotide sequence