Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6478

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14845 and 14846 are separated by 674 nucleotides mRNA_6477: 14845 - HMMPfam-Catalytic LigB subunit of aromatic ring-opening dioxygenase-PF02900,SUPERFAMILY--SSF53213, at 882,440 to 883,452 14845 mRNA_6478: 14846 - K15442 TAD3, ADAT3 tRNA-specific adenosine deaminase 3, at 884,127 to 886,487 14846

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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883,129 + 14845 mRNA_6477 0.68 +0.6
883,164 - 14845 mRNA_6477 0.71 -1.4
883,172 + 14845 mRNA_6477 0.72 -0.2
883,209 - 14845 mRNA_6477 0.76 +0.4
883,362 + -0.0
883,450 + +1.7
883,578 - +0.6
883,581 + +0.9
883,687 - +0.8
883,898 - +2.0
884,115 - +1.9
886,637 - +0.5
886,637 - +0.2
886,647 + +1.7
886,649 + +1.8
886,659 - -2.4
886,675 - +1.3
887,242 + -1.6
887,282 - +0.6
887,388 - +0.1
887,451 + +2.0

Or see this region's nucleotide sequence