Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6516

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14883 and 14884 are separated by 344 nucleotides14884 and 14885 are separated by 262 nucleotides mRNA_6515: 14883 - K16578 CLASP1_2 CLIP-associating protein 1/2, at 970,088 to 973,817 14883 mRNA_6516: 14884 - Hypothetical Protein, at 974,162 to 975,105 14884 mRNA_6517: 14885 - K12879 THOC2 THO complex subunit 2, at 975,368 to 982,291 14885

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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973,425 - 14883 mRNA_6515 0.89 +0.6
973,434 + 14883 mRNA_6515 0.90 +1.3
973,466 + -0.5
973,570 + -0.8
973,571 + -1.6
973,586 + -0.8
973,602 - +1.8
973,697 - -1.2
973,718 + +0.3
973,723 + -0.8
973,744 - +0.5
973,897 - +1.4
973,913 - +0.3
973,914 + +0.0
974,056 + +1.0
974,063 - +0.5
974,205 + -0.7
974,485 + 14884 mRNA_6516 0.34 +0.3
974,624 + 14884 mRNA_6516 0.49 +0.2
974,640 + 14884 mRNA_6516 0.51 -0.3
975,058 - +2.7
975,295 - +1.9
975,309 - +1.7
975,333 + +0.3
975,491 - +0.5
976,057 - -0.0

Or see this region's nucleotide sequence