Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6558

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14925 and 14926 are separated by 344 nucleotides14926 and 14927 are separated by 44 nucleotides mRNA_6557: 14925 - K13566 NIT2 omega-amidase, at 1,088,789 to 1,090,275 14925 mRNA_6558: 14926 - HMMPfam-Bacterial signalling protein N terminal repeat-PF03707, at 1,090,620 to 1,093,721 14926 mRNA_6559: 14927 - Hypothetical Protein, at 1,093,766 to 1,094,365 14927

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,089,638 - 14925 mRNA_6557 0.57 -0.0
1,089,638 - 14925 mRNA_6557 0.57 +1.2
1,089,873 - 14925 mRNA_6557 0.73 +0.6
1,089,929 - 14925 mRNA_6557 0.77 +0.3
1,089,937 + 14925 mRNA_6557 0.77 -0.3
1,090,068 + 14925 mRNA_6557 0.86 -0.3
1,090,077 + 14925 mRNA_6557 0.87 -1.0
1,090,080 - 14925 mRNA_6557 0.87 +0.2
1,090,092 - 14925 mRNA_6557 0.88 -1.7
1,090,094 + 14925 mRNA_6557 0.88 +0.2
1,090,201 + -0.0
1,090,230 - -0.4
1,090,367 - +0.1
1,090,368 - +0.5
1,090,376 - +1.4
1,090,393 - +1.0
1,090,406 - +0.9
1,090,519 + -0.6
1,090,533 + -0.1
1,090,673 + +1.0
1,090,795 - -0.2
1,090,838 - +1.5
1,090,970 - 14926 mRNA_6558 0.11 +0.3
1,091,112 + 14926 mRNA_6558 0.16 +1.8
1,091,201 - 14926 mRNA_6558 0.19 +0.2
1,091,233 + 14926 mRNA_6558 0.20 +0.3
1,091,827 - 14926 mRNA_6558 0.39 +0.5
1,091,843 + 14926 mRNA_6558 0.39 +1.5
1,092,120 - 14926 mRNA_6558 0.48 +1.0
1,092,123 - 14926 mRNA_6558 0.48 -2.3
1,092,153 + 14926 mRNA_6558 0.49 +1.5
1,092,186 - 14926 mRNA_6558 0.50 +0.2
1,092,483 + 14926 mRNA_6558 0.60 -1.7
1,092,537 + 14926 mRNA_6558 0.62 -0.9
1,093,449 + -0.1
1,093,712 + -0.3
1,093,733 - +1.2
1,093,876 + 14927 mRNA_6559 0.18 +0.5
1,093,893 - 14927 mRNA_6559 0.21 -0.0
1,094,007 + 14927 mRNA_6559 0.40 +0.5
1,094,008 - 14927 mRNA_6559 0.40 -0.5
1,094,009 + 14927 mRNA_6559 0.41 -0.7
1,094,031 + 14927 mRNA_6559 0.44 +0.4
1,094,038 - 14927 mRNA_6559 0.45 +0.1
1,094,039 + 14927 mRNA_6559 0.46 -0.0
1,094,041 + 14927 mRNA_6559 0.46 +0.9
1,094,042 - 14927 mRNA_6559 0.46 +0.3
1,094,043 - 14927 mRNA_6559 0.46 -0.4
1,094,047 + 14927 mRNA_6559 0.47 +0.4
1,094,048 - 14927 mRNA_6559 0.47 +1.7
1,094,052 - 14927 mRNA_6559 0.48 +0.5
1,094,052 + 14927 mRNA_6559 0.48 -0.6
1,094,052 - 14927 mRNA_6559 0.48 +0.3
1,094,058 + 14927 mRNA_6559 0.49 +0.2
1,094,062 - 14927 mRNA_6559 0.49 +1.6
1,094,071 + 14927 mRNA_6559 0.51 +0.4
1,094,073 + 14927 mRNA_6559 0.51 -0.8
1,094,082 + 14927 mRNA_6559 0.53 +0.2
1,094,094 - 14927 mRNA_6559 0.55 -0.4
1,094,094 + 14927 mRNA_6559 0.55 -0.2
1,094,100 + 14927 mRNA_6559 0.56 +0.6
1,094,128 - 14927 mRNA_6559 0.60 +0.1
1,094,144 + 14927 mRNA_6559 0.63 -0.0
1,094,175 - 14927 mRNA_6559 0.68 -0.1
1,094,192 + 14927 mRNA_6559 0.71 -0.0
1,094,192 + 14927 mRNA_6559 0.71 +2.9
1,094,197 - 14927 mRNA_6559 0.72 -0.0
1,094,197 - 14927 mRNA_6559 0.72 +0.6
1,094,218 - 14927 mRNA_6559 0.75 -0.1
1,094,224 - 14927 mRNA_6559 0.76 +0.5
1,094,226 - 14927 mRNA_6559 0.77 +0.0
1,094,267 + 14927 mRNA_6559 0.83 -0.5
1,094,327 - -0.2
1,094,334 - +0.5
1,094,344 + +0.5
1,094,346 - +1.3
1,094,346 - -0.4
1,094,346 + +0.7
1,094,354 - -1.1
1,094,359 - +2.5
1,094,371 - +0.4
1,094,380 - +0.1
1,094,383 - +2.0
1,094,389 + +0.2
1,094,393 - +1.4
1,094,395 + -0.6
1,094,412 + -2.6
1,094,422 + -0.9
1,094,463 + +0.3
1,094,494 + +1.1
1,094,497 - +0.0
1,094,518 - +0.1
1,094,532 - -0.8
1,094,533 + +1.3
1,094,561 + -0.4
1,094,569 + +0.4
1,094,572 - +0.9
1,094,601 + +0.2
1,094,628 - +0.4
1,094,634 + +0.6
1,094,641 + +1.5
1,094,655 - +0.9

Or see this region's nucleotide sequence