Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6580

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14946 and 14947 are separated by 60 nucleotides14947 and 14948 are separated by 134 nucleotides14948 and 14949 are separated by 392 nucleotides mRNA_6578: 14946 - HMMPfam-pfkB family carbohydrate kinase-PF00294,SUPERFAMILY--SSF53613, at 1,147,858 to 1,149,094 14946 mRNA_6579: 14947 - KOG0871 Class 2 transcription repressor NC2, beta subunit (Dr1), at 1,149,155 to 1,149,894 14947 mRNA_6580: 14948 - K11098 SNRPF, SMF small nuclear ribonucleoprotein F, at 1,150,029 to 1,150,564 14948 mRNA_6581: 14949 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 1,150,957 to 1,153,150 14949

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,149,074 - +1.2
1,149,156 + +1.5
1,149,955 - -0.6
1,150,712 - +1.0
1,150,737 + -0.3
1,150,842 - -0.1
1,150,845 + -0.3
1,150,849 + -0.6
1,150,850 + +0.9
1,150,864 - -0.2
1,150,873 - +0.9
1,150,993 - -0.4
1,151,005 + -1.3
1,151,026 - -0.7
1,151,342 + 14949 mRNA_6581 0.18 +0.6

Or see this region's nucleotide sequence