Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6582

Experiment: 40 hrs Low Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14949 and 14950 are separated by 396 nucleotides14950 and 14951 are separated by 241 nucleotides mRNA_6581: 14949 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 1,150,957 to 1,153,150 14949 mRNA_6582: 14950 - K11517 HAO (S)-2-hydroxy-acid oxidase, at 1,153,547 to 1,155,730 14950 mRNA_6583: 14951 - Hypothetical Protein, at 1,155,972 to 1,156,740 14951

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
remove
1,152,629 + 14949 mRNA_6581 0.76 +0.2
1,153,181 + +1.7
1,153,222 + +0.2
1,153,238 - +0.4
1,153,346 - -0.7
1,153,346 + +0.7
1,153,349 - +0.3
1,153,366 + -2.3
1,153,379 + +0.6
1,153,388 - +0.8
1,153,519 + -0.3
1,153,537 - +0.7
1,153,676 + -0.0
1,154,122 + 14950 mRNA_6582 0.26 +0.7
1,154,236 - 14950 mRNA_6582 0.32 -0.5
1,154,993 - 14950 mRNA_6582 0.66 -0.2
1,155,160 - 14950 mRNA_6582 0.74 +0.8
1,155,407 - 14950 mRNA_6582 0.85 +0.7
1,155,745 + -0.0
1,155,758 - +0.4
1,156,061 + 14951 mRNA_6583 0.12 +0.4

Or see this region's nucleotide sequence