Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6606

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14973 and 14974 are separated by 91 nucleotides14974 and 14975 are separated by 348 nucleotides mRNA_6605: 14973 - KOG2177 Predicted E3 ubiquitin ligase, at 1,213,438 to 1,216,130 14973 mRNA_6606: 14974 - KOG2761 START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer, at 1,216,222 to 1,217,950 14974 mRNA_6607: 14975 - K14572 MDN1, REA1 midasin, at 1,218,299 to 1,235,391 14975

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,215,592 + 14973 mRNA_6605 0.80 -2.0
1,216,168 + +1.0
1,216,783 + 14974 mRNA_6606 0.32 -0.3
1,216,794 + 14974 mRNA_6606 0.33 +1.8
1,216,805 - 14974 mRNA_6606 0.34 -0.6
1,216,825 - 14974 mRNA_6606 0.35 -1.8
1,216,880 - 14974 mRNA_6606 0.38 +1.1
1,217,099 - 14974 mRNA_6606 0.51 -0.6
1,217,190 - 14974 mRNA_6606 0.56 +0.1
1,217,223 + 14974 mRNA_6606 0.58 -0.2
1,217,815 - -0.8
1,217,821 + +1.4
1,217,822 - +2.1
1,217,833 - +1.3
1,217,833 - +0.1
1,217,957 + +0.2
1,217,966 + +0.8
1,217,983 + +2.5
1,218,127 + +0.9
1,218,150 + -0.5

Or see this region's nucleotide sequence