Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6619

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14987 and 14988 are separated by 564 nucleotides mRNA_6619: 14987 - KOG0092 GTPase Rab5/YPT51 and related small G protein superfamily GTPases, at 1,264,449 to 1,266,706 14987 mRNA_6620: 14988 - K02935 RP-L7, MRPL12, rplL large subunit ribosomal protein L7/L12, at 1,267,271 to 1,267,860 14988

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,263,475 - -0.2
1,263,573 + +1.9
1,263,592 + +2.2
1,263,595 + -1.4
1,263,705 - -0.1
1,263,723 + +0.1
1,263,734 - +0.4
1,263,752 + +0.3
1,263,755 - -1.2
1,264,006 - +0.5
1,264,023 + +0.9
1,264,023 + -0.3
1,264,033 - +0.4
1,264,037 - -0.7
1,264,044 + -0.1
1,264,159 + +0.6
1,264,662 + +0.7
1,264,969 - 14987 mRNA_6619 0.23 -0.0
1,265,112 - 14987 mRNA_6619 0.29 -0.1
1,265,413 - 14987 mRNA_6619 0.43 +0.8
1,265,477 + 14987 mRNA_6619 0.46 -1.7
1,265,477 + 14987 mRNA_6619 0.46 +0.9
1,265,594 + 14987 mRNA_6619 0.51 +0.5
1,265,619 + 14987 mRNA_6619 0.52 -2.4
1,265,867 + 14987 mRNA_6619 0.63 -0.5
1,265,880 - 14987 mRNA_6619 0.63 +0.1
1,265,907 + 14987 mRNA_6619 0.65 -0.7
1,266,030 - 14987 mRNA_6619 0.70 +0.5
1,266,489 + -0.8
1,266,732 + -0.2
1,266,894 - +0.5
1,267,078 + +0.2

Or see this region's nucleotide sequence