Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6638

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15005 and 15006 are separated by 223 nucleotides mRNA_6637: 15005 - K15711 SMARCA3, HLTF SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3, at 1,309,484 to 1,313,910 15005 mRNA_6638: 15006 - K02575 NRT, narK, nrtP, nasA MFS transporter, NNP family, nitrate/nitrite transporter, at 1,314,134 to 1,316,580 15006

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,313,897 + +1.0
1,314,176 - +1.0
1,314,177 - -0.1
1,314,259 - +1.4
1,314,446 + 15006 mRNA_6638 0.13 +0.1
1,314,999 - 15006 mRNA_6638 0.35 -0.4
1,315,481 + 15006 mRNA_6638 0.55 +0.3
1,315,517 + 15006 mRNA_6638 0.57 +0.4
1,315,707 + 15006 mRNA_6638 0.64 +0.5
1,316,874 - -1.3
1,316,921 - +1.7
1,317,067 - +1.0
1,317,080 + +0.9
1,317,145 + -0.2
1,317,149 + +1.3
1,317,150 - +0.6
1,317,153 + +0.1
1,317,155 + +0.7
1,317,160 + -0.0
1,317,184 + -1.1
1,317,212 - +0.5
1,317,215 - -0.5
1,317,225 - -2.9
1,317,226 - -0.7
1,317,434 - -0.5
1,317,508 + +2.0
1,317,517 - -0.5
1,317,530 + +4.7
1,317,533 - +0.1
1,317,535 + +0.0
1,317,543 + +0.2

Or see this region's nucleotide sequence