Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6663

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15030 and 15031 are separated by 456 nucleotides15031 and 15032 are separated by 186 nucleotides mRNA_6662: 15030 - HMMPfam-G-patch domain-PF01585,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-G-patch domain profile.-PS50174,SMART-RNA recognition motif-SM00360,SMART-glycine rich nucleic binding domain-SM00443,SUPERFAMILY--SSF54928, at 1,379,343 to 1,382,272 15030 mRNA_6663: 15031 - Hypothetical Protein, at 1,382,729 to 1,383,844 15031 mRNA_6664: 15032 - K03165 TOP3 DNA topoisomerase III, at 1,384,031 to 1,388,134 15032

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,382,310 - -1.7
1,382,320 + -0.1
1,382,731 + +1.1
1,382,773 - -1.3
1,382,907 + 15031 mRNA_6663 0.16 +0.0
1,383,482 - 15031 mRNA_6663 0.67 -0.4
1,383,497 + 15031 mRNA_6663 0.69 -0.0
1,383,924 - -0.2
1,384,034 + +0.9
1,384,179 + +1.6
1,384,334 - +0.4
1,384,357 - +1.1
1,384,808 - 15032 mRNA_6664 0.19 -0.7

Or see this region's nucleotide sequence