Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6706

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15074 and 15075 are separated by 199 nucleotides mRNA_6706: 15074 - K16261 YAT yeast amino acid transporter, at 1,497,015 to 1,499,228 15074 mRNA_6707: 15075 - KOG3750 Inositol phospholipid synthesis protein, Scs3p, at 1,499,428 to 1,503,895 15075

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,496,017 - -1.0
1,496,041 + +1.9
1,496,058 + -1.3
1,496,059 - -0.4
1,496,083 - +0.5
1,496,099 - +0.4
1,496,104 - +1.1
1,496,215 + -0.8
1,496,227 - -0.7
1,496,288 - +0.9
1,496,360 + +0.4
1,496,360 - +0.2
1,496,373 + +0.9
1,496,376 - -0.9
1,496,378 + -0.5
1,496,382 + -1.1
1,496,395 - +0.8
1,496,396 - +0.2
1,496,398 + +1.3
1,496,402 - +1.2
1,496,455 - -1.1
1,496,518 - +1.0
1,496,543 - +1.0
1,496,543 - +0.1
1,496,563 + +1.5
1,496,949 + -0.2
1,496,985 - +0.0
1,497,001 + +1.6
1,497,127 - +0.8
1,497,502 - 15074 mRNA_6706 0.22 +0.2
1,497,576 + 15074 mRNA_6706 0.25 +0.4
1,497,590 + 15074 mRNA_6706 0.26 +0.6
1,497,803 + 15074 mRNA_6706 0.36 +0.7
1,497,822 - 15074 mRNA_6706 0.36 +1.0
1,498,764 - 15074 mRNA_6706 0.79 +2.6
1,499,331 - +0.1
1,499,337 - +1.3
1,499,507 - -0.0
1,499,642 + +0.8
1,499,650 + +0.3

Or see this region's nucleotide sequence