Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6723

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15090 and 15091 are separated by 872 nucleotides15091 and 15092 are separated by 92 nucleotides mRNA_6722: 15090 - K17908 WIPI, ATG18 autophagy-related protein 18, at 1,539,294 to 1,541,156 15090 mRNA_6723: 15091 - K01078 E3.1.3.2 acid phosphatase, at 1,542,029 to 1,544,062 15091 mRNA_6724: 15092 - HMMPfam-Voltage-dependent anion channel-PF03595, at 1,544,155 to 1,546,536 15092

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,541,215 - +1.6
1,541,255 - +1.1
1,541,510 - +2.9
1,541,644 + +0.8
1,541,806 - +0.4
1,541,815 - +0.3
1,541,820 + -0.3
1,541,930 - +0.5
1,541,935 - +0.9
1,541,938 + +0.4
1,541,947 - +2.0
1,541,948 - +1.5
1,542,005 - +0.1
1,542,084 - +0.6
1,542,097 - -0.7
1,542,193 - +0.8
1,542,257 + 15091 mRNA_6723 0.11 +0.4
1,542,280 - 15091 mRNA_6723 0.12 -0.3
1,542,353 - 15091 mRNA_6723 0.16 +0.8
1,542,389 - 15091 mRNA_6723 0.18 +0.1
1,542,543 + 15091 mRNA_6723 0.25 +0.8
1,542,792 - 15091 mRNA_6723 0.38 +0.5
1,542,795 + 15091 mRNA_6723 0.38 -0.3
1,542,849 - 15091 mRNA_6723 0.40 +1.0
1,542,891 + 15091 mRNA_6723 0.42 +2.5
1,542,999 + 15091 mRNA_6723 0.48 +1.6
1,542,999 + 15091 mRNA_6723 0.48 +0.4
1,543,118 - 15091 mRNA_6723 0.54 -0.2
1,543,197 + 15091 mRNA_6723 0.57 +1.0
1,543,279 - 15091 mRNA_6723 0.61 +2.5
1,543,307 - 15091 mRNA_6723 0.63 +0.7
1,543,366 + 15091 mRNA_6723 0.66 +1.5
1,543,368 + 15091 mRNA_6723 0.66 +0.2
1,543,540 + 15091 mRNA_6723 0.74 +0.2
1,543,549 - 15091 mRNA_6723 0.75 -0.1
1,543,567 - 15091 mRNA_6723 0.76 +0.7
1,543,689 - 15091 mRNA_6723 0.82 +1.5
1,543,740 - 15091 mRNA_6723 0.84 +1.7
1,543,741 - 15091 mRNA_6723 0.84 -1.0
1,543,935 - -0.0
1,544,021 - -0.5
1,544,173 - +0.1
1,544,191 - -0.1
1,544,199 + -2.7
1,544,246 - -0.1
1,544,298 - -0.6
1,544,307 - -0.9
1,544,311 - +0.1
1,544,314 - +0.3
1,544,329 - -0.3
1,544,361 - +2.9
1,544,418 + 15092 mRNA_6724 0.11 +1.7
1,544,421 - 15092 mRNA_6724 0.11 -1.0
1,544,427 + 15092 mRNA_6724 0.11 +0.6
1,544,439 - 15092 mRNA_6724 0.12 +1.0
1,544,454 - 15092 mRNA_6724 0.13 -0.6
1,544,468 - 15092 mRNA_6724 0.13 -1.1
1,544,488 - 15092 mRNA_6724 0.14 +1.2
1,544,493 + 15092 mRNA_6724 0.14 +0.1
1,544,498 - 15092 mRNA_6724 0.14 +2.0
1,544,584 - 15092 mRNA_6724 0.18 -2.1
1,544,685 + 15092 mRNA_6724 0.22 +0.9
1,544,689 - 15092 mRNA_6724 0.22 -0.5
1,544,696 - 15092 mRNA_6724 0.23 +0.3
1,544,836 - 15092 mRNA_6724 0.29 -0.3
1,544,852 - 15092 mRNA_6724 0.29 +0.3
1,544,889 + 15092 mRNA_6724 0.31 -0.3
1,544,893 - 15092 mRNA_6724 0.31 +0.5
1,544,919 + 15092 mRNA_6724 0.32 +1.3
1,544,924 - 15092 mRNA_6724 0.32 +0.0
1,544,986 - 15092 mRNA_6724 0.35 +0.9
1,545,057 - 15092 mRNA_6724 0.38 +0.2

Or see this region's nucleotide sequence