Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6751

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15118 and 15119 are separated by 77 nucleotides15119 and 15120 are separated by 219 nucleotides mRNA_6750: 15118 - SUPERFAMILY--SSF47473, at 56,227 to 57,172 15118 mRNA_6751: 15119 - K10578 UBE2J1, NCUBE1, UBC6 ubiquitin-conjugating enzyme E2 J1, at 57,250 to 58,945 15119 mRNA_6752: 15120 - Hypothetical Protein, at 59,165 to 59,914 15120

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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56,257 - +2.1
56,312 + +2.3
56,430 + 15118 mRNA_6750 0.21 -0.2
56,442 + 15118 mRNA_6750 0.23 +0.8
56,445 - 15118 mRNA_6750 0.23 +0.1
56,570 - 15118 mRNA_6750 0.36 -1.5
56,576 - 15118 mRNA_6750 0.37 +0.1
56,586 + 15118 mRNA_6750 0.38 +0.9
56,588 + 15118 mRNA_6750 0.38 -0.3
56,589 + 15118 mRNA_6750 0.38 +0.1
56,606 + 15118 mRNA_6750 0.40 +2.6
56,627 + 15118 mRNA_6750 0.42 +1.8
56,713 - 15118 mRNA_6750 0.51 +1.1
57,300 + -0.4
57,303 + +1.0
57,312 - -1.1
57,596 - 15119 mRNA_6751 0.20 -0.0
57,605 + 15119 mRNA_6751 0.21 -0.0
57,613 - 15119 mRNA_6751 0.21 +0.5
57,617 + 15119 mRNA_6751 0.22 +0.1
57,760 - 15119 mRNA_6751 0.30 +1.1
57,763 + 15119 mRNA_6751 0.30 -0.5
57,763 + 15119 mRNA_6751 0.30 -0.9
57,767 - 15119 mRNA_6751 0.30 +0.3
57,896 - 15119 mRNA_6751 0.38 -0.2
58,173 - 15119 mRNA_6751 0.54 -0.8
58,771 + 15119 mRNA_6751 0.90 +0.8
59,132 - +2.5
59,529 + 15120 mRNA_6752 0.49 +1.0
59,542 + 15120 mRNA_6752 0.50 -0.1
59,655 - 15120 mRNA_6752 0.65 +0.6
59,676 + 15120 mRNA_6752 0.68 +0.7
59,792 - 15120 mRNA_6752 0.84 +1.2
59,814 - 15120 mRNA_6752 0.87 +0.9
59,850 - +0.6
59,941 + +0.6

Or see this region's nucleotide sequence