Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6820

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15186 and 15187 are separated by 171 nucleotides15187 and 15188 are separated by 202 nucleotides15188 and 15189 are separated by 184 nucleotides mRNA_6818: 15186 - KOG0729 26S proteasome regulatory complex, ATPase RPT1, at 206,564 to 206,841 15186 mRNA_6819: 15187 - SUPERFAMILY--SSF103107, at 207,013 to 207,504 15187 mRNA_6820: 15188 - K00931 proB glutamate 5-kinase, at 207,707 to 209,492 15188 mRNA_6821: 15189 - K07739 ELP3, KAT9 elongator complex protein 3, at 209,677 to 212,045 15189

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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206,810 + 15186 mRNA_6818 0.88 -0.6
207,205 + 15187 mRNA_6819 0.39 -0.6
207,368 - 15187 mRNA_6819 0.72 -2.0
207,378 + 15187 mRNA_6819 0.74 -0.6
207,383 + 15187 mRNA_6819 0.75 +0.3
207,401 + 15187 mRNA_6819 0.79 -2.1
207,410 + 15187 mRNA_6819 0.81 -1.7
207,479 - -1.4
207,518 + -0.2
207,525 - -0.2
207,527 - +1.8
207,532 - +0.5
207,564 + +0.8
207,589 - -0.1
207,682 - +2.0
210,325 + 15189 mRNA_6821 0.27 -0.8

Or see this region's nucleotide sequence