Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6872

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15239 and 15240 are separated by 175 nucleotides15240 and 15241 are separated by 230 nucleotides mRNA_6871: 15239 - K17600 VPS54 vacuolar protein sorting-associated protein 54, at 319,945 to 325,501 15239 mRNA_6872: 15240 - KOG3035 Isoamyl acetate-hydrolyzing esterase, at 325,677 to 326,693 15240 mRNA_6873: 15241 - K01409 KAE1, tsaD, QRI7 N6-L-threonylcarbamoyladenine synthase, at 326,924 to 328,423 15241

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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324,705 + 15239 mRNA_6871 0.86 -0.2
324,714 - 15239 mRNA_6871 0.86 +0.4
324,714 + 15239 mRNA_6871 0.86 -0.7
324,947 - +0.5
324,966 - +1.4
324,970 + +0.9
325,275 - +0.1
325,389 + +1.5
325,443 - +0.2
325,453 + +0.6
325,475 - +1.0
325,563 - +2.4
325,592 - -0.2
325,594 - +1.6
325,598 - +1.7
325,754 - +0.1
325,982 - 15240 mRNA_6872 0.30 +0.5
326,032 - 15240 mRNA_6872 0.35 +2.0
326,483 - 15240 mRNA_6872 0.79 +0.8
326,610 + +0.4
326,765 + +0.3
327,035 - +0.2
327,186 + 15241 mRNA_6873 0.17 +2.1
327,204 - 15241 mRNA_6873 0.19 +1.9
327,630 - 15241 mRNA_6873 0.47 +1.0
327,670 + 15241 mRNA_6873 0.50 +1.4
327,673 - 15241 mRNA_6873 0.50 -0.1

Or see this region's nucleotide sequence