Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6882

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15249 and 15250 are separated by 418 nucleotides15250 and 15251 are separated by 690 nucleotides mRNA_6881: 15249 - Hypothetical Protein, at 344,637 to 347,114 15249 mRNA_6882: 15250 - Hypothetical Protein, at 347,533 to 348,159 15250 mRNA_6883: 15251 - BLAST similar to An03g02750 [Aspergillus kawachii IFO 4308], at 348,850 to 350,156 15251

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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346,763 - 15249 mRNA_6881 0.86 +0.5
346,868 + -0.9
346,874 + +1.3
347,116 - +0.0
347,448 - +1.1
347,453 + +0.0
347,453 - +1.4
347,589 + +0.9
347,595 + +0.6
347,611 + 15250 mRNA_6882 0.12 +1.2
347,873 + 15250 mRNA_6882 0.54 +1.1
348,022 + 15250 mRNA_6882 0.78 +0.7
348,196 + +0.3
348,311 + +1.0
348,461 + +1.2
348,760 + +0.4
348,852 - -0.0
349,043 - 15251 mRNA_6883 0.15 -0.7
349,078 + 15251 mRNA_6883 0.17 -1.2

Or see this region's nucleotide sequence