Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6889

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15256 and 15257 are separated by 479 nucleotides15257 and 15258 are separated by 702 nucleotides mRNA_6888: 15256 - K04422 MAP3K13, LZK mitogen-activated protein kinase kinase kinase 13, at 359,759 to 363,523 15256 mRNA_6889: 15257 - K17065 DNM1L dynamin 1-like protein, at 364,003 to 366,716 15257 mRNA_6890: 15258 - K09496 CCT4 T-complex protein 1 subunit delta, at 367,419 to 369,510 15258

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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363,084 - 15256 mRNA_6888 0.88 -0.7
363,175 - +0.4
363,198 - +1.5
363,331 + +0.0
363,775 + -0.0
363,780 + +1.2
363,785 - -0.0
363,785 - -0.6
363,786 - +0.8
363,788 - +1.8
363,788 + -0.5
363,846 - +0.8
363,849 + +0.9
363,970 - +0.4
367,081 - -0.2
367,085 + +0.1
367,086 + -0.5
367,208 - +0.2
367,235 - -0.3
367,236 + -0.1

Or see this region's nucleotide sequence