Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6925

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15292 and 15293 are separated by 521 nucleotides15293 and 15294 are separated by 176 nucleotides mRNA_6924: 15292 - BLAST PC-Esterase [Xanthophyllomyces dendrorhous], at 444,538 to 446,309 15292 mRNA_6925: 15293 - K02331 POL5, MYBBP1A DNA polymerase phi, at 446,831 to 450,905 15293 mRNA_6926: 15294 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 451,082 to 452,962 15294

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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446,082 - 15292 mRNA_6924 0.87 +0.3
446,095 + 15292 mRNA_6924 0.88 +0.6
446,137 - -0.3
446,242 + -0.5
446,244 - +2.0
446,250 + -0.1
446,387 - +1.3
446,390 + -0.7
446,541 - -0.5
446,671 + +1.0
446,707 - -0.0
446,710 + -0.0
446,734 + -1.6
446,864 - -1.0
446,896 - -0.3
447,006 - +0.3
450,962 + +0.1
450,965 + -0.5
450,969 + +0.1
450,973 + +0.9
450,974 + +1.9
450,987 + -0.3
450,989 - -0.1
450,989 + +0.9
450,994 - -0.6
451,000 + +0.9
451,002 - +0.3
451,022 + +0.6
451,137 - -0.1
451,279 - 15294 mRNA_6926 0.10 +3.2
451,300 - 15294 mRNA_6926 0.12 -1.6
451,458 - 15294 mRNA_6926 0.20 +0.8

Or see this region's nucleotide sequence