Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6945

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15312 and 15313 are separated by 291 nucleotides15313 and 15314 are separated by 190 nucleotides mRNA_6944: 15312 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 495,585 to 496,942 15312 mRNA_6945: 15313 - SUPERFAMILY--SSF52047, at 497,234 to 499,004 15313 mRNA_6946: 15314 - K04713 SUR2 sphinganine C4-monooxygenase, at 499,195 to 500,447 15314

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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496,680 - 15312 mRNA_6944 0.81 -1.0
496,864 - +0.2
496,886 - -0.5
496,974 - +0.3
496,989 - -0.0
497,002 - -3.8
497,148 + -0.2
497,294 - +0.4
497,438 + 15313 mRNA_6945 0.12 +0.1
497,449 - 15313 mRNA_6945 0.12 +0.5
497,459 + 15313 mRNA_6945 0.13 +1.4
497,594 - 15313 mRNA_6945 0.20 -0.0
497,597 + 15313 mRNA_6945 0.20 +0.0
497,997 + 15313 mRNA_6945 0.43 -0.3
498,333 - 15313 mRNA_6945 0.62 +2.4
498,486 + 15313 mRNA_6945 0.71 +1.6
498,574 - 15313 mRNA_6945 0.76 +0.8
498,931 + -1.3
498,941 - +0.4
498,942 - +1.3
498,947 + +0.6
499,066 - -1.1
499,073 + +1.4

Or see this region's nucleotide sequence