Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6947

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15314 and 15315 are separated by 636 nucleotides mRNA_6946: 15314 - K04713 SUR2 sphinganine C4-monooxygenase, at 499,195 to 500,447 15314 mRNA_6947: 15315 - K02555 MIH1 M-phase inducer tyrosine phosphatase, at 501,084 to 504,114 15315

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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500,551 + +1.6
500,570 + +0.6
500,666 + +1.0
500,685 - -0.4
500,695 + +0.1
500,700 + -2.5
500,711 - +1.4
500,736 + +2.7
500,802 + +0.3
500,868 - +1.3
500,893 + +1.4
500,963 + +1.1
500,993 + +0.3
500,998 + -0.7
501,087 + +1.7
501,131 + -0.2
501,237 + +0.0
501,338 + +1.1
501,338 + +1.0
501,338 + +0.5
501,467 + 15315 mRNA_6947 0.13 -1.3
503,884 + +3.2
504,343 - +0.7
504,348 + +0.1
504,423 + +1.7
504,482 + +2.2
504,483 + +0.5
504,486 - -2.0
504,486 - +0.2
504,582 + -0.0
504,630 + +0.0
504,698 - -0.6
504,772 + +0.2
504,775 + +1.6
504,798 + +1.0
504,799 + -1.8
504,799 + +1.4
504,799 + +0.1
504,906 - -1.0
505,082 - -0.4
505,086 + +0.8
505,087 - -0.8
505,097 - -0.7
505,103 + +0.3

Or see this region's nucleotide sequence