Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6949

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15316 and 15317 are separated by 385 nucleotides mRNA_6948: 15316 - BLAST putative ephrin type-a receptor 8-like protein [Botry..., at 505,314 to 506,461 15316 mRNA_6949: 15317 - HMMPfam-Cenp-O kinetochore centromere component-PF09496, at 506,847 to 507,636 15317

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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506,113 + 15316 mRNA_6948 0.70 -0.0
506,114 + 15316 mRNA_6948 0.70 +1.7
506,400 + +0.4
506,408 + -3.1
506,415 - +0.6
506,426 + -1.9
506,539 + -0.4
506,539 - -0.7
506,549 - -1.0
506,560 - +1.1
506,568 - +0.7
506,570 + +0.7
506,575 + +1.5
506,575 + +0.8
506,582 - +1.5
506,588 + -0.9
506,652 - +0.4
506,655 + +1.3
506,672 - +0.3
506,679 + +0.0
506,695 + +0.1
506,713 - +0.9
506,849 + -0.4
506,970 + 15317 mRNA_6949 0.16 -0.4
506,980 - 15317 mRNA_6949 0.17 +3.0
506,987 - 15317 mRNA_6949 0.18 +1.1
507,575 + +1.5
507,850 + +0.8
507,964 - +0.2
507,991 - +0.1
508,079 - +0.7
508,148 + +1.6
508,263 - -0.6
508,272 - +0.9
508,274 - +1.0
508,275 - +0.2
508,276 - +1.1
508,288 + -2.1
508,290 - +1.8
508,296 - +0.5
508,297 - -0.7
508,299 - +1.1
508,304 + -0.7
508,304 + +0.6
508,310 + +0.0
508,319 + +1.5
508,328 + +0.1
508,449 - -0.3
508,449 - +1.1
508,473 + -0.8
508,479 - +1.6
508,610 + +0.4

Or see this region's nucleotide sequence