Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6964

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15331 and 15332 are separated by 945 nucleotides15332 and 15333 are separated by 560 nucleotides mRNA_6963: 15331 - Hypothetical Protein, at 549,842 to 550,144 15331 mRNA_6964: 15332 - K18754 LIN28 protein lin-28, at 551,090 to 553,316 15332 mRNA_6965: 15333 - Hypothetical Protein, at 553,877 to 555,010 15333

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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550,286 + +0.4
550,419 - +0.0
550,443 - -2.2
550,448 - -0.7
550,479 + +0.2
550,489 + +1.9
550,492 + -1.7
550,531 + -0.0
550,536 + -1.0
550,554 - +1.4
550,644 - +0.3
550,649 - +0.5
550,654 - -0.3
550,657 + +0.4
550,721 + +0.4
550,760 - -1.2
550,934 + -0.5
551,411 + 15332 mRNA_6964 0.14 +1.1
551,432 - 15332 mRNA_6964 0.15 -0.3
551,472 - 15332 mRNA_6964 0.17 +0.1
551,518 + 15332 mRNA_6964 0.19 -0.4
551,547 - 15332 mRNA_6964 0.21 +2.1
551,552 - 15332 mRNA_6964 0.21 +0.9
551,562 - 15332 mRNA_6964 0.21 +0.3
551,592 - 15332 mRNA_6964 0.23 +0.2
551,597 + 15332 mRNA_6964 0.23 +0.1
551,597 - 15332 mRNA_6964 0.23 +0.0
551,618 - 15332 mRNA_6964 0.24 -0.6
551,624 + 15332 mRNA_6964 0.24 +0.2
551,626 + 15332 mRNA_6964 0.24 -0.4
551,642 + 15332 mRNA_6964 0.25 +0.3
551,656 - 15332 mRNA_6964 0.25 -0.2
551,672 - 15332 mRNA_6964 0.26 -0.1
551,705 + 15332 mRNA_6964 0.28 +0.0
551,780 - 15332 mRNA_6964 0.31 +0.3
551,784 + 15332 mRNA_6964 0.31 +0.1
551,834 - 15332 mRNA_6964 0.33 +0.6
551,911 + 15332 mRNA_6964 0.37 +2.7
552,036 - 15332 mRNA_6964 0.42 +1.1
552,051 + 15332 mRNA_6964 0.43 -0.1
552,184 + 15332 mRNA_6964 0.49 +1.0
552,330 + 15332 mRNA_6964 0.56 -0.4
552,471 + 15332 mRNA_6964 0.62 +0.2
552,607 + 15332 mRNA_6964 0.68 -0.5
552,626 - 15332 mRNA_6964 0.69 -0.2
552,660 + 15332 mRNA_6964 0.70 -0.7
553,384 + +0.9
553,441 + +0.6
554,082 + 15333 mRNA_6965 0.18 +0.3
554,102 + 15333 mRNA_6965 0.20 -0.0
554,110 - 15333 mRNA_6965 0.21 -2.6

Or see this region's nucleotide sequence