Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6986

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15353 and 15354 are separated by 139 nucleotides15354 and 15355 are separated by 564 nucleotides mRNA_6985: 15353 - BLAST chitin deacetylase [Moniliophthora roreri MCA 2997], at 602,865 to 604,394 15353 mRNA_6986: 15354 - K12872 RBM22, SLT11 pre-mRNA-splicing factor RBM22/SLT11, at 604,534 to 605,830 15354 mRNA_6987: 15355 - BLAST plasma membrane protein [Pseudozyma hubeiensis SY62], at 606,395 to 609,554 15355

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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603,588 - 15353 mRNA_6985 0.47 +2.3
603,591 - 15353 mRNA_6985 0.47 -0.6
603,668 - 15353 mRNA_6985 0.52 -1.1
603,677 - 15353 mRNA_6985 0.53 -1.7
603,699 - 15353 mRNA_6985 0.55 -0.3
603,974 - 15353 mRNA_6985 0.72 +0.6
603,992 - 15353 mRNA_6985 0.74 -0.9
604,129 - 15353 mRNA_6985 0.83 +0.1
604,295 - +0.1
604,300 - +0.2
604,300 - -0.5
604,449 - +0.9
604,454 - +2.4
604,455 + +2.1
604,484 + +1.4
604,589 - +0.0
605,959 + -1.8
605,976 + -0.8
606,083 + -0.1
606,083 + +0.4
606,083 - +0.9
606,087 + -0.4
606,088 - +0.5
606,088 - +1.9
606,093 + -0.1
606,098 - +0.9
606,119 - +0.3
606,365 - +1.5
606,489 + -0.1
606,568 - +0.8
606,586 + +0.2
606,682 - -1.5
606,713 + 15355 mRNA_6987 0.10 +0.7

Or see this region's nucleotide sequence