Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7021

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15389 and 15390 are separated by 282 nucleotides mRNA_7021: 15389 - K21027 TRMU, SLM3 tRNA-5-taurinomethyluridine 2-sulfurtransferase, at 692,794 to 694,459 15389 mRNA_7022: 15390 - KOG0758 Mitochondrial carnitine-acylcarnitine carrier protein, at 694,742 to 696,268 15390

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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691,794 + +0.6
691,796 - +0.8
691,796 - -0.3
691,939 + -0.5
691,940 - +0.2
692,072 - +0.0
692,081 + +1.1
692,084 - +0.1
692,232 - +1.9
692,248 + +0.3
692,393 - +0.6
692,395 + -0.4
692,395 + -0.4
692,527 + +0.6
692,528 + +1.0
692,553 - -2.6
692,661 + +0.9
692,678 - +1.5
692,680 + +2.1
692,683 + +0.2
692,827 - -0.9
692,845 - -1.1
692,856 - +0.6
692,991 - 15389 mRNA_7021 0.12 +0.9
693,111 + 15389 mRNA_7021 0.19 +0.5
693,117 - 15389 mRNA_7021 0.19 -1.6
693,137 + 15389 mRNA_7021 0.21 +0.8
693,137 + 15389 mRNA_7021 0.21 +0.2
693,146 + 15389 mRNA_7021 0.21 -0.7
693,164 + 15389 mRNA_7021 0.22 +0.0
693,404 - 15389 mRNA_7021 0.37 +2.3
693,709 + 15389 mRNA_7021 0.55 +0.7
693,709 - 15389 mRNA_7021 0.55 -0.5
694,769 + +0.1
694,890 - -0.2
695,063 - 15390 mRNA_7022 0.21 +0.1
695,163 + 15390 mRNA_7022 0.28 +0.0
695,180 - 15390 mRNA_7022 0.29 +1.9
695,194 + 15390 mRNA_7022 0.30 +1.2
695,323 + 15390 mRNA_7022 0.38 +0.2

Or see this region's nucleotide sequence