Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7035

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15402 and 15403 are separated by 316 nucleotides15403 and 15404 are separated by 874 nucleotides mRNA_7034: 15402 - HMMPfam-UBA/TS-N domain-PF00627,HMMPfam-Uncharacterized conserved protein (DUF2196)-PF09962,ProSiteProfiles-Ubiquitin-associated domain (UBA) profile.-PS50030,SUPERFAMILY--SSF46934, at 717,485 to 718,005 15402 mRNA_7035: 15403 - K11826 AP2M1 AP-2 complex subunit mu-1, at 718,322 to 720,163 15403 mRNA_7036: 15404 - K00831 serC, PSAT1 phosphoserine aminotransferase, at 721,038 to 722,425 15404

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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717,327 + -0.7
717,339 + +1.1
717,486 + +0.6
717,602 - 15402 mRNA_7034 0.22 +1.3
717,615 + 15402 mRNA_7034 0.25 +0.8
717,617 - 15402 mRNA_7034 0.25 -0.1
717,765 - 15402 mRNA_7034 0.54 -0.2
717,767 - 15402 mRNA_7034 0.54 -0.6
718,081 + -0.2
720,492 + -2.0
720,649 - +0.3
720,777 - -0.9
720,795 - +0.2

Or see this region's nucleotide sequence