Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7058

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15425 and 15426 are separated by 521 nucleotides15426 and 15427 are separated by 218 nucleotides mRNA_7057: 15425 - K15634 gpmB probable phosphoglycerate mutase, at 777,852 to 778,935 15425 mRNA_7058: 15426 - KOG0206 P-type ATPase, at 779,457 to 784,844 15426 mRNA_7059: 15427 - BLAST golgi apparatus membrane protein [Pochonia chlamy..., at 785,063 to 786,823 15427

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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778,634 - 15425 mRNA_7057 0.72 -0.4
778,825 - 15425 mRNA_7057 0.90 +1.0
778,862 + -0.3
778,945 + +3.6
778,965 + -0.6
779,069 - +0.1
779,078 + +0.5
779,089 - +0.3
779,090 - +1.8
779,095 + +0.3
779,110 + +0.6
779,117 - -4.2
779,213 - +2.2
779,219 + -0.7
779,224 + -0.7
779,243 + +0.7
779,252 - -0.5
779,253 + -0.3
779,255 - +1.3
779,256 + -0.2
779,257 + -0.2
779,257 - +0.5
779,305 - -0.5
779,406 + +0.4
779,408 - +2.5
779,432 - +0.9
779,441 + -0.3
779,578 - -1.5
779,851 - +0.2
779,986 - +1.7
780,169 + 15426 mRNA_7058 0.13 -0.6
780,551 - 15426 mRNA_7058 0.20 +0.8
780,552 + 15426 mRNA_7058 0.20 +0.5
780,709 + 15426 mRNA_7058 0.23 +2.8
780,751 + 15426 mRNA_7058 0.24 +0.9
780,888 - 15426 mRNA_7058 0.27 -0.0
781,215 + 15426 mRNA_7058 0.33 +1.9
781,510 - 15426 mRNA_7058 0.38 +0.1
781,592 - 15426 mRNA_7058 0.40 +1.0
781,984 - 15426 mRNA_7058 0.47 +1.9
782,589 + 15426 mRNA_7058 0.58 -0.2
782,919 - 15426 mRNA_7058 0.64 +0.2
782,922 + 15426 mRNA_7058 0.64 -0.2
782,943 - 15426 mRNA_7058 0.65 -2.0
783,328 + 15426 mRNA_7058 0.72 +0.3
783,772 - 15426 mRNA_7058 0.80 +2.7
783,824 + 15426 mRNA_7058 0.81 -0.2
783,863 - 15426 mRNA_7058 0.82 +0.2
783,888 + 15426 mRNA_7058 0.82 +0.6
784,083 - 15426 mRNA_7058 0.86 +0.0
784,251 + 15426 mRNA_7058 0.89 +1.0
784,452 - +0.4
784,703 + -0.7
784,789 - +1.6
784,798 - +0.0
784,822 - -0.4
785,100 - +0.1
785,275 + 15427 mRNA_7059 0.12 -0.3
785,377 - 15427 mRNA_7059 0.18 +2.2
785,527 - 15427 mRNA_7059 0.26 +1.9

Or see this region's nucleotide sequence