Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7067

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15434 and 15435 are separated by 404 nucleotides15435 and 15436 are separated by 477 nucleotides mRNA_7066: 15434 - K00799 GST, gst glutathione S-transferase, at 799,211 to 800,128 15434 mRNA_7067: 15435 - K13507 GAT glycerol-3-phosphate O-acyltransferase / dihydroxyacetone phosphate acyltransferase, at 800,533 to 803,766 15435 mRNA_7068: 15436 - K00167 BCKDHB, bkdA2 2-oxoisovalerate dehydrogenase E1 component beta subunit, at 804,244 to 806,337 15436

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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799,632 - 15434 mRNA_7066 0.46 -0.9
799,794 + 15434 mRNA_7066 0.64 +1.2
799,891 - 15434 mRNA_7066 0.74 +0.9
800,042 + -1.1
800,202 - +0.1
800,213 - +0.0
800,316 - +0.2
800,354 + -1.1
800,514 - +0.0
800,761 + -1.0
803,567 + -0.7
803,570 + +1.0
803,584 - +0.3
803,709 - +0.9
803,722 - +0.9
803,728 - +2.0
803,756 - +1.3
803,847 - +2.5
803,869 - -0.3
803,875 - +1.5
803,877 - -0.1
803,877 - +0.1
803,885 + +0.3
803,887 - -0.8
803,894 + +1.8
803,896 + +0.5
803,914 + +0.7
803,970 - +0.0
803,971 - -0.6
804,015 - +1.3
804,028 - +0.1
804,031 - +0.2
804,110 + +0.8
804,125 + +1.2
804,142 + -0.2
804,144 + +1.3
804,144 + +0.7
804,144 + +2.3
804,147 - +0.4
804,156 - +0.8
804,165 - +0.1
804,175 - +1.8
804,180 + +1.6
804,184 + +0.7
804,338 - +0.3
804,354 + +0.4
804,371 - -0.9
804,453 + -0.8
804,466 + 15436 mRNA_7068 0.11 +1.1
804,487 - 15436 mRNA_7068 0.12 +0.8
804,504 + 15436 mRNA_7068 0.12 -0.9
804,632 - 15436 mRNA_7068 0.19 +0.6

Or see this region's nucleotide sequence