Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7077

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15444 and 15445 are separated by 169 nucleotides15445 and 15446 are separated by 454 nucleotides mRNA_7076: 15444 - K17413 MRPS35 small subunit ribosomal protein S35, at 825,955 to 826,915 15444 mRNA_7077: 15445 - K18789 XGD1 xylogalacturonan beta-1,3-xylosyltransferase, at 827,085 to 831,280 15445 mRNA_7078: 15446 - Hypothetical Protein, at 831,735 to 832,558 15446

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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826,917 + -0.1
826,976 - +0.7
827,128 - -2.2
827,203 + +0.5
827,364 + +2.2
827,365 - +1.0
827,423 - +0.3
827,510 - 15445 mRNA_7077 0.10 -0.9
827,554 + 15445 mRNA_7077 0.11 +0.1
827,699 + 15445 mRNA_7077 0.15 -0.1
828,140 - 15445 mRNA_7077 0.25 -0.2
828,140 - 15445 mRNA_7077 0.25 +0.0
828,301 + 15445 mRNA_7077 0.29 +0.5
828,312 + 15445 mRNA_7077 0.29 -0.4
828,579 - 15445 mRNA_7077 0.36 -1.9
829,028 + 15445 mRNA_7077 0.46 +0.2
829,088 - 15445 mRNA_7077 0.48 +0.9
829,145 + 15445 mRNA_7077 0.49 +1.3
829,344 - 15445 mRNA_7077 0.54 +0.1
829,501 - 15445 mRNA_7077 0.58 +1.6
829,620 - 15445 mRNA_7077 0.60 +1.0
830,669 - 15445 mRNA_7077 0.85 -0.2
830,834 - 15445 mRNA_7077 0.89 +0.1
830,842 + 15445 mRNA_7077 0.90 +1.3
830,973 + +1.2
831,111 + -0.3
831,121 - +0.1
831,251 + +0.3
831,270 + -1.1
831,280 + +0.9
831,372 + +0.7
831,399 - -0.1
831,412 - +0.6
831,539 + +0.6
831,556 - -0.3
831,558 - +1.2
831,558 - +0.3
831,565 - +0.9
831,575 + +0.8
831,579 + +0.4
831,584 - +1.2
831,585 + -0.2
831,586 - -0.4
831,586 - +0.4
831,592 + -0.9
831,598 - +1.0
831,604 + +1.1
831,610 + -0.7
831,653 - -0.1
831,666 + -1.0
831,756 + -0.4
831,856 + 15446 mRNA_7078 0.15 +2.4

Or see this region's nucleotide sequence