Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7092

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15459 and 15460 are separated by 336 nucleotides15460 and 15461 are separated by 358 nucleotides mRNA_7091: 15459 - ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157, at 859,673 to 862,971 15459 mRNA_7092: 15460 - KOG2545 Conserved membrane protein, at 863,308 to 866,540 15460 mRNA_7093: 15461 - K16073 ALR, MNR magnesium transporter, at 866,899 to 868,705 15461

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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862,356 - 15459 mRNA_7091 0.81 +0.5
862,787 + +1.3
862,813 - -2.6
862,831 - +0.7
862,848 - +1.3
862,975 + +1.7
863,009 + -1.6
863,175 - -0.9
864,048 + 15460 mRNA_7092 0.23 +0.6
864,049 + 15460 mRNA_7092 0.23 -0.9
864,049 - 15460 mRNA_7092 0.23 -0.1
864,057 + 15460 mRNA_7092 0.23 +1.1
864,223 + 15460 mRNA_7092 0.28 +3.1
864,341 + 15460 mRNA_7092 0.32 +1.0
864,377 - 15460 mRNA_7092 0.33 +1.2
864,532 + 15460 mRNA_7092 0.38 +0.0
864,810 - 15460 mRNA_7092 0.46 -2.1
864,838 + 15460 mRNA_7092 0.47 +3.3
865,100 - 15460 mRNA_7092 0.55 +1.9
865,259 + 15460 mRNA_7092 0.60 +1.2
865,404 + 15460 mRNA_7092 0.65 +0.4
865,425 + 15460 mRNA_7092 0.65 +1.5
865,554 - 15460 mRNA_7092 0.69 +0.2
866,121 - 15460 mRNA_7092 0.87 +1.8
866,301 + +0.9
866,428 - -0.3
866,428 + -0.9
866,438 + +0.1
866,440 + +0.5
866,444 + -0.2
866,497 + -1.0
866,574 - +0.7
866,584 - +1.5
866,590 - +1.2
866,594 + -1.1
866,598 - -0.4
866,609 - -0.5
866,614 + -0.4
866,621 + +1.2

Or see this region's nucleotide sequence