Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7110

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15477 and 15478 are separated by 370 nucleotides15478 and 15479 are separated by 280 nucleotides mRNA_7109: 15477 - HMMPfam-C2 domain-PF00168,ProSiteProfiles-C2 domain profile.-PS50004,SMART-Protein kinase C conserved region 2 (CalB)-SM00239,SUPERFAMILY--SSF49562, at 903,883 to 906,158 15477 mRNA_7110: 15478 - HMMPfam-Zinc-binding dehydrogenase-PF00107,HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,SMART-Enoylreductase-SM00829,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 906,529 to 908,168 15478 mRNA_7111: 15479 - Interpro Subunit 11 of the general transcription factor TFIIH, at 908,449 to 909,688 15479

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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905,785 - 15477 mRNA_7109 0.84 +1.7
905,787 + 15477 mRNA_7109 0.84 -0.5
905,817 - 15477 mRNA_7109 0.85 +0.4
906,052 - +0.6
906,087 + +0.3
906,127 + +0.8
906,197 - +2.2
906,208 + +0.7
906,644 + +1.1
906,652 + +1.1
907,109 + 15478 mRNA_7110 0.35 +1.8
907,380 + 15478 mRNA_7110 0.52 +1.6
907,823 - 15478 mRNA_7110 0.79 -0.5
907,973 - 15478 mRNA_7110 0.88 -0.0
908,138 + +1.2
908,240 + -0.2
908,244 + +0.1
908,269 - -0.2
908,988 - 15479 mRNA_7111 0.43 +2.0
909,154 - 15479 mRNA_7111 0.57 +0.4

Or see this region's nucleotide sequence